Scaffold Ga0164292_10068832

Overview

Basic Information

• Taxon OID: 3300013005
• Scaffold ID: Ga0164292_10068832
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2732
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F029029	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_100688321	F009064	N/A	MIVNLSQEEVRVCTLLAVERWLTKFGSTDRPNYAQGKADGKLEPEINANIRANVCEWAVAKQYNLAWNTPWYPNGLHTRRHPLSDVGNNIEVRSVRTQTSIPFWEKDKGKIIVGAKCLDTEYYSSVEVYGYIKPEDYMND
Ga0164292_100688323	F029029	N/A	MKKKMTQEPREIKDLFQKDYSNSMDLRGNPIGDVCVCGSELFTAIIAFEAGEIAFYFLDGECVNCGSLVTLPTPIDNIGMDCD*
Ga0164292_100688324	F008296	AGG	MNQEWVQEYDLLVSSLAQEYSRKYSIVETADIKQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAALKYCEQEKARKFGYDMVDLYYYDPSVIEAFLPSILADTYEIPSKILDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNKLAEAKQNILRLRFTTDNYEWNELAKELNTSADGARMRVTRAINSLIRILGGWRTFNDTDNLVDKNEDEEEDDTRA*