Scaffold Ga0164292_10036589

Overview

Basic Information

• Taxon OID: 3300013005
• Scaffold ID: Ga0164292_10036589
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3934
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012447	Metagenome	280	Y
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_100365893	F012447	GGA	MAKALRLVPVDKDYRALLRTFSKMDDIAKNDMKDIAKQLAERGANYAKGAANNAPYNVKQARAVAESIKISKSDKAPSFSIGGRQKVGASAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLQGFEKIKNAWTGRV*
Ga0164292_100365895	F023328	AGG	MTVYTPTYRVTIAGTIQTSTTLQNGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTGAFIKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGAVAYPEELDGARITRILEETLYVAWEDISNTFTWNDFTTETWANYGVQGIDTIDAGRYEVLARPAEIDQAYNLTDTTQQSALGYLYDTPEFSIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVAAQNDTSINNYGLLQEVRSTILAETADATEQATNFVNYRGTPKVSLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYNEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI*