Scaffold Ga0164292_10028000

Overview

Basic Information

• Taxon OID: 3300013005
• Scaffold ID: Ga0164292_10028000
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4555
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F008616	Metagenome / Metatranscriptome	330	Y
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_100280002	F008616	AGG	MLKLQISWELETGEKFDEWTRPIELAMAEKELYNNKSIVRVLMDESTPSNQLLLFLGHKIQQRVTKKVESFDVWKTKVISIAASDFETANFTKPEVLGEQQSS*
Ga0164292_100280005	F023328	AGG	MTIYTPTYRVTIAGTVQTSTTLENATITYGRNDFFEATQPSYCNLELLNLEGTSPVVELLDTVLIEVTDSTGAYVKLFTGEVSGVFNRFESAGLGGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYIAWEDISNTQTWDDFTTETWANYGVQGIDTIDAGRYEVLARPAQVEQAYNLTDITQQSGLGYLYDTTDFKIGYADAERRSENYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVQEVEAQNDTSINNYGLLQEVRSTILAETADATEQATNFVNYRGTPKVSLEEVTVNLSNSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIAEGYNEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI*
Ga0164292_100280007	F001805	AGG	MASTNKSEKIMVGIDDQVIELTGQAKTDFIADQQARQAETLLLEAEYKAKQDARESAIKKLADIAGLTKEELASIL*