 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013005 Open in IMG/M |
| Scaffold ID | Ga0164292_10008674 Open in IMG/M |
| Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8285 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003134 | Metagenome / Metatranscriptome | 505 | Y |
| F005697 | Metagenome / Metatranscriptome | 392 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164292_1000867410 | F005697 | AGGCGG | MGFLDGYEASRERLERWLKTFPTGRIETRIVEFSAEKGYVLVEAKAFRNDTDMNPAGIDYAYGYQAAYQPNMKRWFCEDTVTSAIMRVQQLVMGGAERSTKEIMEQVDRTPAKVANAEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHDGAPKTWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV* |
| Ga0164292_100086743 | F003134 | GGA | MTQWNPVWKVEIDGVEYTDAILANLTIRSGRTNIYEQAQAGYVNLELIDIAQTAIPVSINSTIGVEIKNTSNTFIPIFGGNVVDIGLEVRDVGSTTFTQTYNITALGALARLPKFIFTDSLPRDFDGDQIFDVLQEILLSQWQSVPGSLTWATYNPTETWANAANTGLGEIDRPGNYDLAARSGSADPIDAYTLVAALATSGLGYIYEDAQGRIGYADSTHRSTYLAANGYVDLDAKHARAAGLRIETRVGDVRNAITIKYGANSTSDVSANDAASIATYGNLAQIITTTLHDAADANAQAAFYLSLRANPQPIFSEITFDLTNPEIDNADRDNLLGIFMGEAIALTNLPLNMNSGRFQGFVEGWSFQASYNQLSVTLLLSPLAYSLQAMAWEDVPITESWNSVSPTLDWENATIVA* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |