Scaffold Ga0164293_10679840

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10679840
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 661
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F007919	Metagenome / Metatranscriptome	342	Y
F020907	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_106798401	F000919	GGAG	MRFRNIEFRWSKVNNKYELVKWYTHDSGDSCYVVAFFNKSTEGYDMETVGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK*
Ga0164293_106798402	F007919	GAGG	MTEKVKFTQVSRVICPKTGIHYLDAIDENGIHWVAQQEIGVERWITYKETWKRDPQQPLDL*
Ga0164293_106798403	F020907	GGA	MTDEQLLNSLQGTMATIDPYSVKKEAIDEYRIDTIEERLTRIEDKVDLLITQ