Scaffold Ga0164293_10220144

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10220144
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1359
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F015702	Metagenome	252	Y
F031031	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_102201443	F000821	GGAG	MNEEYLRAKFNLCLDQAEKNIKEEEIALAIKNLERANSAMARLFGIDEGDNND*
Ga0164293_102201444	F015702	GGAG	MIREVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKVLIDSLKEEANE*
Ga0164293_102201445	F001477	AGGAGG	MSNVYTIHPPKSDLILFYEIVEPEGRGERVRWGGGDAKSAIQWLYLAPVGSRILVSAWDSDEEDAHLVGQTIDITELIQQAREVGL*
Ga0164293_102201446	F031031	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSF