Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10120614 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1986 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033041 | Metagenome / Metatranscriptome | 178 | Y |
F058996 | Metagenome / Metatranscriptome | 134 | Y |
F082677 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164293_101206142 | F058996 | N/A | MRKTNIVTPMWKNCLAVLESNDLELADNKLMELVWKLADYTMLGFKDADKVEGVKLEVWKERVWFAIQNAGLLPD* |
Ga0164293_101206144 | F033041 | N/A | MEKIKINSNFKFTFDTDVDLRRAELSGYIESYDMVRICVKQIDNGNQVDFPIKSREDYFETVASLNERANEYDMVEIYPSTHSYAMYDYI* |
Ga0164293_101206145 | F082677 | N/A | MMKQEDKFNGLSKGQVKQIIRRNMITRIKVSSKVYDRKKEKRGLAFGD* |
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