Scaffold Ga0164293_10093337

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10093337
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2326
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ilyomonas → Ilyomonas limi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y
F039044	Metagenome / Metatranscriptome	164	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100933371	F039044	N/A	EVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYLGASINSLLDPGAKVSYLDNKYLFSYQFQPLEKLHTLSVSKKIF*
Ga0164293_100933372	F036704	N/A	MWIEIDVMLGGSTMDWADLGIEVKHEFVRRMVRVEDIAYVQELVHDIQVIYFYDKTSCLLRGSYTEIRDELLHLDQEGQLD*
Ga0164293_100933375	F008081	N/A	MEESEIINPFGYGTASRVIDENRKPQEWWIDYISINQAVAENEFYVLFEDGCLVKKGRSKFRSSQYLKGDRFRSFAACHQSIT*
Ga0164293_100933377	F047062	N/A	MNYSSEDYFDKEITFTYEGQDYLWIGDYTIEQTSEEGSEYAPAYGEIDITIHHTQSLSSYEHGFDVIPTPSMLMELELEIERNY*