Scaffold Ga0164293_10092092

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10092092
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2344
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100920921	F018175	N/A	KGVSKIYDCNIEYCEYNTPAAMDMMQKHGCYIYHDLLAEEDFRSNGSNWQMYGFAHVNGKTYKYYYETKQWGVEVKDFTHYQHNSKTWKAAKLDKTNFPYTLDPGEDYLPYAIEPVSIDSSRNKHIGSDFDSFLKTNNIVLKRDMNWAIKMVAQGKIVYREEFPEVILFPIGSKNNPETKLNVDDLFAEDWTIFRGKSLKEVLDDLDAGKSIRRKSWYPEYLMGKYSKDFELNLQDLKARDWEVVDIVAEVDKNQQDIEDGKY*
Ga0164293_100920923	F015339	GAG	METDPKILSEQYIRGRIYSFVRFKKYLHEIAYIFCEEFQYDKDDIIEVSLSDDGKTVWIHFDSGTIGFASELLWNQNVRETFKKNFEVD*