Scaffold Ga0164293_10079363

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10079363
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2564
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F038242	Metagenome	166	N
F084228	Metagenome	112	Y
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100793633	F038242	N/A	MLTIKNIKQLELNFCHNRGLKRITETHNKLDEQFYCFHFGPIGDGEGYNKEREVRLGRDANQGEYQIFVMGLHLATRRFITIDDVKTKDGLASEISKVLAKAQWWWENEVTK*
Ga0164293_100793634	F007690	N/A	LKIIEIKNIGKMLTIKNILKLQNQPIWDGWEVKLIYEGNHNGTYIFELHRESAWGNGDCKIMLERTGHKLPNKSNLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL*
Ga0164293_100793637	F090305	N/A	MLTIKNIESLNDTKLGYWQVAEAKARRPMKWLMTEHYSISLGRANDGAAILIDRNINPLTKQYHVYVCYDSFDNKIYEGAFTKRVIMDKGHFLANMMGYVKAEWELRKK*
Ga0164293_100793638	F084228	N/A	MLTIQNVTKLAGRRIFGGWVVRDMNCHPTQNKYMFDMHCMGPLGNTIDRCTISLNRIGELQRNMFKPDTTAYFLNYNGERTDVCVTKDWILNPENFISQLKYIINEYHNKR*