Scaffold Ga0164293_10057747

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10057747
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3099
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002387	Metagenome / Metatranscriptome	565	Y
F007644	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100577471	F002387	N/A	MVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLTEIDEDYFEIL*
Ga0164293_100577474	F007644	AGAAGG	MATKTSRFLEYMKIHLISLNQDLDKHRPEDTLLVEYIEGQIEATKHLLSVATDIMNNSNERYINE*
Ga0164293_100577475	F000263	AGG	MNNEDIGLPPHLQRLINYDIDGLNIMHGELKNLMLIWEKELDKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIKEKGGQK*
Ga0164293_100577476	F001019	GGAGG	MSYEPSLEILEVNYGCSPGGVDTFEVYDRLDIDPIVNLPIFETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA*