Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10056878 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10056878 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3129
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3129

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100568782	F023575	N/A	MATSKGLALVYGSGGTITLYNQTGAGPGTTLSGAISTIESYDVTHEADVEQIKNGSGEVVAQVSANERISLNITFIPSSATDATAALTGASLPGFNSYVKIADAKATTYGGVSINGDYVYSGGGSVKFTNSGKAMVTMTVTKYPSLTGSATVYPL*
Ga0164293_100568783	F010835	GGAG	MNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFADADLEDRMPDFPRIIVRASTAVPVHPLDRTCELDVTAILQLSADDTSEPHLLTVVQVFENLLQYLYVDGNISELNADDTDPSGGFNAQFAIPTDFGINDTSERARTFTRSMTIFAAANAI*
Ga0164293_100568784	F013879	GGAG	MTPTVVVDTTRFSAAWREYLPRTKRSLADAINARTFYLLLRLYCLLPPKSPQAARNKILDYFNRPVGERRRDKKTGKLVGRSRELRVVHLIAQAKNKKAGKEGLYGERMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRARKGSAGVRSIAANQALLNLANQYGLPTENVSVHRGSSAYSYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVTVK*
Ga0164293_100568785	F007260	GAG	MGNPSFLWQGQLVRCLPAAITDANSVIAGGFQDNVQARILVKFSDWRLADSTLVTVDASVWSCDVGSNADRLLQESGSLILQENTDRLLTTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10056878

Overview

Ecosystem & Geography

Associated Families

Sequences