Scaffold Ga0164293_10048954

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10048954
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3413
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003961	Metagenome / Metatranscriptome	459	Y
F020863	Metagenome	221	Y
F060700	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100489541	F003961	GGA	MTEKSSDIAKRLILSGVAEGLTIEAATAAAGKSYKTYEYYRRTDKVFADKMDRTRLGLKDKNFASSDVHDLTFTEFRE
Ga0164293_100489547	F060700	GGAGG	MKTLRELAQEAGIDEKYFDGNFLMLDQRYAIMQDEKGLHLTDVMSWASFSPRTIGRKSNATAKGLQFQLGQYKVWMKQIGQKVG*
Ga0164293_100489549	F020863	AGG	MQTTIEEVRSLVATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSKYGSGHWEPRGFSDYLGGSKAEAAHSLRKLIAGIHTGLLIAEKKEDVA*