Scaffold Ga0164293_10045093

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10045093
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3584
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F034908	Metagenome	173	Y
F043777	Metagenome	155	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1004509311	F034908	AGGAG	MKKFSVVVEVSMEESKYEEVKTWDVEPSDHVATLLTEPLRETGMVVKAYAVETDHSLYDRQKKHQDHLLQADAYNDLEEEIISRSCVGGVCED*
Ga0164293_100450935	F043777	AGG	MIDNSPNEKAGELAEAIFDDVVYLLDIQHKCIDYDEDGDTFDTEYGQDLFNCIYDQCVVYFERETT*
Ga0164293_100450937	F031359	AGGA	MVDKKEKQIIVEQIMVTGYVKHGNGRKTKFEFDKKAFEPKDLESIFSGLGRIYK*
Ga0164293_100450938	F029418	GGAGG	VTQHQKNEEKKRKFEEDIIEVAVAEYYHWVELNKSTRSEKDARMFYDAMRLGVVRGINFATNQYMQSLKNFEEGKHENKTDI*
Ga0164293_100450939	F061801	AGGAGG	MKTKPIFKSHASPSYKGYDREVYLSEYTPINKEHYRRLRFCAVVSVGINVFLLLVMVMR*