Scaffold Ga0164293_10044501

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10044501
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3612
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F002267	Metagenome / Metatranscriptome	576	Y
F020009	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100445013	F002267	AGG	MPIVIGPGIEIGPGITAERGAVIAANLVYDLDAANYAAMPANGTVVAGTGTTGQRTLTVANAGASISWQAANGGVFRKSNAVGTDVMYGGPNWTTGQSYTVFMAYKLSVTSSGRLLNTQSEASRDWLLGAYNGFVNAFYPNYSVNLPSSGTNAVWNFIWGTWNATTGLGQLYAATSTQPTTTSFTATNLGGGGGANQMRLFSRSGGSEVQTADIAFVKAYDGILTLANVQSLYGEYKARFGY*
Ga0164293_100445014	F001009	GAG	MASNLNSEFNYRYQVIGSTPWEKIKTLQGFLVGRKRAAVLEECAELKYQAKLEELDHLRSIPAAKHLILNLRAEILELESHLDDQKHAFELNRKEIKILEKLMAELYMEVEPTRLKHEDGTPYTDDEMFEANANYEFTVTVGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPNEAVLLTKPDVVGLIGNSTAKLNTLKGISQ*
Ga0164293_100445015	F020009	AGG	MIDPANMPAPTAKEIAQARENAFNAERPASWVWNEAAVSYVAPIAIPSDGYPYLWNEATTTWVPFPDYPRE*