Scaffold Ga0164293_10043477

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10043477
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3660
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F025023	Metagenome / Metatranscriptome	203	N
F037220	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100434772	F005528	AGGA	MRILSAIMATLATLTMSLGIAQAASAPARTSDAVNALQPLWQPPVADRLDPIQPIRFRHGDVSWLPSLAKQAGWPDHAIPKLTELVLRESGACPNRKGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDKSRNKWAAVCREMNICTQEPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKASTTSVP*
Ga0164293_100434776	F025023	AGAAGG	MTDIFEGRTYDTGVDRTCVLQLQTDFDSLRPHQRAMLKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHLIQGVLFKTAGGAVGHLDAACAEQFAVLCRAIRWDEQDIVWNISTDSFGFPSKENEVSNVR*
Ga0164293_100434777	F037220	GAGG	MSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITIKTEKEGDANLWARGAMITAIREAAKQASVTELTGNKISVKYSADGEKKAGFNAPKLFA