Scaffold Ga0164293_10035778

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10035778
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4095
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007644	Metagenome / Metatranscriptome	347	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1003577811	F034924	N/A	VFGTKYINYYTIVSAADEYQAAEIANLRPSTDWNELPMDDVIEATDVYLDEDDTVDLQLNI*
Ga0164293_1003577813	F003603	AGAAGG	MKTKEEQVGELLANSLEDHFFNPAALGRYLADQPSYTLDRVMEVVAWVIEKQARRYDREVETNGTISEGLAIASKLDLVIDKIKEQNELKNVKLPITTKERRAIVKALPKEQEQSYRYSWLHETNNQSNTFVNQGM*
Ga0164293_100357782	F000868	AGGCGG	MSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQLFADFRFAEMADNNYLKGRFNLFYDLKPGDQYYLEYDEEK*
Ga0164293_100357785	F007644	GAGG	MTKSSKFLEYMKLHLISLEQDLEENPCSLHVVDIEGQIYATKHLLSVATDIMNANE*
Ga0164293_100357787	F000263	AGG	MNNEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDILVELYQLTYQLSFAIGARDEA*
Ga0164293_100357789	F000441	AGGAGG	MKMSDEYLNERLNKAQKLLWGGSETENIEAHNIISKLIKDRIEGDEGQYDSL*