Scaffold Ga0164293_10026854

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10026854
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4790
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004232	Metagenome / Metatranscriptome	447	Y
F006135	Metagenome / Metatranscriptome	380	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1002685410	F006135	N/A	VALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE*
Ga0164293_100268546	F004232	GAG	MKSNQTIVAVDPGVGGGFAVSTSEGILLFPMPESLPDTAQLLSGFKVADSHLWVEKVPKFVSKLTSSASMATLHENYGIVQGLGYAQGYALHRVEPKIWQEPLGLGGRKSCETGPEWKRKLKSKAQELYPNLDVTLKNCDALLILHYAMGGGR*