Scaffold Ga0164293_10015544

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10015544
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6389
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001554410	F046179	AGGTGG	MSRPQWENDALLAIMRDGVAIEDAPWVLECIQKAADDIAEMDDADQFPLYIEYHGNDKAALCNIDAETFADVLACLGIDLNRLETLWGRKHIDPPTDDWSME*
Ga0164293_1001554413	F056323	N/A	MIKLFSLQEMADDLKLPPAVVALWAADGYIPHIMRDGLPLFDPVAVGKHIAKQLNELNKIDDGNKPTTN*
Ga0164293_100155444	F039944	GGAGG	MIRDLFLAIALVLCLALAIAVTSGTLGGPSDLEMRIRASEPLNL*