Scaffold Ga0164293_10013606

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10013606
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6843
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020159	Metagenome / Metatranscriptome	225	Y
F041732	Metagenome / Metatranscriptome	159	N
F042755	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001360611	F042755	AGGAG	MFDTMLKLVLAIAVVVVLIAIGPWLVIWSLNTLFPVLAIEFTFWTWGAVVIMGTFFRANVSVKRKD*
Ga0164293_100136065	F020159	AGGAG	MMELILAFVAGMIVMDFMYAWRMGIPQMLWYHFRNRNNPQPNFEQE*
Ga0164293_100136068	F041732	N/A	MNKQGATMIFTADQVWGCAAAAQRINEGYFKEDQWDTAEAGVKIKTANKSLVKNWLARGDYSLVTAADIAAGQTARNHFKSYTFLAIAGRLNEFQETAMKLAAKEEFTGRDIYDFAVISCLPSVAVRDAANSELKREIYTSEQLQGAVGDNIVGDITVISARFNPDYNKHKITARMGESFVDFWFGKELEGELRIKGKIKTQRGNKTTQLNYVKISG*