Scaffold Ga0164293_10010585

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10010585
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7742
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F044466	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100105851	F004664	N/A	MSSNVTGYKVLNEHMVIPGGWHYRVPETGIEIMGGSWPQLHEFVRNHYTANAIKIPENLDTLITEYSCRNGADCMYNEVEIRKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEATRRASICSTCIYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDENLQSCEFCGCFIRSMVWFPIETL
Ga0164293_100105854	F012111	AGG	MSERAPRRYTDGTVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNNAQSLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTSLRRASDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLDVLQIVKTENAYGDQCFCIARGSDDSIQIWEVTKADKFDNNIPDGKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFSVTYRPDQYPGWIEWTDFSECATTTQCLDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP*
Ga0164293_100105856	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYEYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYTQSTKKFTTLTGVIREATNTASRLYEYDATTLLELDLAVYDPDETLPQYRRSYLADRCNNEDDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0164293_100105857	F044466	AGGA	MIDPGTAILGGAAISGVGSLLGGLFGGRKPKVPELKPIDFAREQQQAIQQNIASLEPATQLAQRTTAAEQSLLETQLRRAIPGYDQIVQQAGQNIGAALRGELSPEVSAQVQRSTAGRALSGGFGAGSGFGRSLTARDLGLTSMQIQNQGLAQAQNFIQQQRAFGMAQPFSVSSMFITPAQRIGAIQEQQARMYGRDLTAAQVAAAPSPMQQAAQTALTNFGGV