Scaffold Ga0164293_10009172

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10009172
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8317
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F027417	Metagenome	194	Y
F033321	Metagenome	177	Y
F044984	Metagenome / Metatranscriptome	153	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000917210	F093528	AGGA	MSEDTTTHVFTVVVQAGKKWNKVELFDFSGGEPTPLGQGEGTNWRTALGEALSKITLSSELPEKTVNDAAKEIAEEKGDE*
Ga0164293_1000917214	F033321	AGGAG	MSRELEVLRKEYERAIENPIFDDPKDYCILLDLITDRIEQIEGEK*
Ga0164293_1000917215	F003212	GGAGG	MKDRYLITLEVETYDGDPREWDWEKLSTGEDIIKIISSDFKGRVLPTEGEGE*
Ga0164293_1000917217	F027417	GGAGG	MNYDYRVTFVTDYLTITTNVCLELDDTTGNLSDEAYGRAAVKGMNNIEDEIGKINESIINDITVTLILDDEEVELNG*
Ga0164293_100091724	F013279	AGGCGG	MQYDYRCPDCNSELTIERSIHEDPREPSCFDCHVTMIRKWDTPAITFKGKGFYSTDK*
Ga0164293_100091727	F017972	GGAGG	VRTRHLQLVTHEHSDTIGKRESVSSPYGPVSPGSTTLLAQETLRANQLAQLSELLNSLESVVESLNYKSFTAYDTLVTATEAVRVALLGIQTDEAGTNADGS*
Ga0164293_100091728	F044984	GGAGG	MVDDTQRRLETAARKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKKQDELQGKKWVGIDGNTNLGVGVHTRANGANDLAYTSNEGKNQGDNGGKA*