Scaffold Ga0164293_10008321

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10008321
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8736
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004519	Metagenome / Metatranscriptome	434	Y
F009318	Metagenome / Metatranscriptome	319	Y
F010395	Metagenome / Metatranscriptome	304	N
F025271	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100083211	F009318	N/A	MARLLLLLLLTACTNDRPWKVIEVRAKGDACEYVLSRSNGFGPQVKTLTDTCGRYQLFQTIPNRI*
Ga0164293_1000832113	F010395	N/A	MPEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKACELLGYDPAMAQWAGTKEVNIASQQNLADEVQVSYFHALNPEE*
Ga0164293_1000832118	F004519	N/A	MATFRKYAFPKQADADKVLALCTGTTAAVALGVLDGFICYDILWEGDAPEEAAQYETWPEPCGVHAFAGWEEQYEADYNANKHKTK*
Ga0164293_100083212	F025271	N/A	MTPEYTLQAACVKLFKLLKPHEDGRLFLNLNNPRSRTNGHFLKGIGLTAGVADMTYLSDKGVIFLEFKAEKGKQSLSQKWWQGVVQEAGYRYEVIRSIEDFQRVVASVE*