Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10008321 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8736 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (10.53%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004519 | Metagenome / Metatranscriptome | 434 | Y |
F009318 | Metagenome / Metatranscriptome | 319 | Y |
F010395 | Metagenome / Metatranscriptome | 304 | N |
F025271 | Metagenome / Metatranscriptome | 202 | N |
Protein ID | Family | RBS | Sequence |
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Ga0164293_100083211 | F009318 | N/A | MARLLLLLLLTACTNDRPWKVIEVRAKGDACEYVLSRSNGFGPQVKTLTDTCGRYQLFQTIPNRI* |
Ga0164293_1000832113 | F010395 | N/A | MPEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKACELLGYDPAMAQWAGTKEVNIASQQNLADEVQVSYFHALNPEE* |
Ga0164293_1000832118 | F004519 | N/A | MATFRKYAFPKQADADKVLALCTGTTAAVALGVLDGFICYDILWEGDAPEEAAQYETWPEPCGVHAFAGWEEQYEADYNANKHKTK* |
Ga0164293_100083212 | F025271 | N/A | MTPEYTLQAACVKLFKLLKPHEDGRLFLNLNNPRSRTNGHFLKGIGLTAGVADMTYLSDKGVIFLEFKAEKGKQSLSQKWWQGVVQEAGYRYEVIRSIEDFQRVVASVE* |
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