Scaffold Ga0164293_10007950

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10007950
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8953
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014850	Metagenome / Metatranscriptome	259	Y
F029659	Metagenome / Metatranscriptome	187	N
F048310	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000795013	F014850	GGAG	MKIEETYEVTKDDIRYKDKDVVATIRITAGDFKDAVFHFGEITFADEENSDGTYSIGFNYDIISEEHKELQGTENFESHLGEILNDLLRHSLEAAEKRYKNELGTKNTETPDIG*
Ga0164293_100079502	F048310	GAG	MKTVLTREQKIEILGKIGEKYVGNYLAKNRKVEFSLDNFDSEKDLLADGKTVEVKVGTPFITEGAIAFKKSQLTKCRSVDEFYFVTIPAPKYHYRWSGWLFRIENNFKCKIRNITRSNGWIDEMVLVPIEQDAVISMFKVEDYVIAEMMKYTTSKY*
Ga0164293_100079507	F029659	AGGAG	MLHNINSAIDTFQGTKTQFVKNFVKNEELAKPLNTFIEAQTSYAKAVAVEVNTFFTTLGMSAYSFDAKKAFSTSK*