Scaffold Ga0164293_10006032

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10006032
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10309
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022657	Metagenome / Metatranscriptome	213	Y
F030356	Metagenome	185	Y
F032141	Metagenome	180	Y
F041596	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000603211	F030356	AGGA	MLDIKNIPVDKINQNKKQNATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLVLAVTDSTAPVNGIDYIHPSVKPAVDYATAVITKGLIPNSEVNFEFVPDSEEDEAAARQATDMVSKVVNQMNEPHFIMERWVMDAAMHKNGMMMIKPVREPITRYVETAGTADELRAFEQQAAESGLTALRQSRRRTTVKMEQVLAEVQQLLGGLEEQSAQARVDAMMGRLGAAEEQDPDAMAAEEAELAQGQLEGEEEILSAAIARNTVYTAKYKLTGYNINIKFHPIAQHYWICDPTVPEMRDQPFCGYYDPMTIQEAMELYPGIVLDEFERFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYATSAARAEIQLGLLTATPRLGVKPDKLDFEMLQDGEAAIFILDSKFDPATDVYQIPPPSGNLQFLEVAMQRIQQDTMSMIGMTTPADVFNPEVMAPGNSGIKLQMALTPNQIIQDNTVRNCAEGLKEALWLTWRTLIQYGDDYGVKKLAASCHPDRQPVFLDYLAWDDMNFCDRKQVHIELALGMMSEENALARTQIIQKCQQELYQTVQAMVQSGTLTPDMFKKVKKPFADTLYQLGVKDCDTYLPSDEEVVAMITAGQEAQKNREPSPDDKKKLADANLADVRARQIQAEVAGEDAESQLDFMSMAAGDPKVYS*
Ga0164293_1000603214	F022657	AGGAG	MAEITTSQIGNGTTAYGADIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRLP
Ga0164293_100060323	F032141	AGGAG	MRISTKNMQSKPINQSRGPTTGNENTGTKRKDAMAEKARTGSEKSDLAKMVTDAVARRGELMRSVRDPAVEPVKAKVNVGRGPTKGNAGTQQKSSAARKGALGASSGY*
Ga0164293_100060324	F041596	AGGA	MTNKNQTSPGENIWDDTAEETTTTKPAKASKPVQPEPDINTRDFDLEGLMTDFPTAKELERFVYDETGVVLNLKGRANKLKYQVAMDVLNGAPTDPRYIGTDNPYLDKTDLVPEDPMKELPPRDPAIPGRDQLQNEFFTAFVPHSDPEYHSQGRKMHCTFKKYKNGLITYEVIGPIEPRPYGEKIDKWGKVRPEIIRWVDPRTGEQIVQRPDGSFTPIGRRLKAMMQTFRYNNTNQWIKYVDRDFVQLDQKAAVNPWDLAE*