Scaffold Ga0164293_10005759

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10005759
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10563
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (47.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F012023	Metagenome / Metatranscriptome	284	Y
F023522	Metagenome	209	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000575932	F012023	AGG	MKQRDYEKLNERISEQACESAFGKELTKEQLQKLIQDKFERARVYHEALAKAPTFSVN*
Ga0164293_1000575937	F042301	AGGAG	MIKAGSKWSSATGQEFRVISVVELEGHTWVHYIKENISEDDIREYSCYIESFLDRFREQPND*
Ga0164293_1000575938	F011754	AGGA	MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVISQYMYRDDDYLYGLDESKCQAVALELWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSENKSVKSAWDAYRFMLHMTENIDNEAVEVFKQ*
Ga0164293_1000575942	F023522	N/A	DHLKIDQRLTELLNSYHAIVLRDDDFSQKLTWCLENCQDKFRDLSDPNGRAWYFQNEQDAAMFAMKWA*