Scaffold Ga0164293_10005377

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10005377
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10893
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005946	Metagenome / Metatranscriptome	385	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100053771	F005946	N/A	TFTAATAAADRTYPLPSIPAATATLSGSSAAQLYASTPPIENAILVVAVEIFQSITAPGNQIMSDNFQPSPFILGRSLSNRVIGLLGPFLDVETMCQ*
Ga0164293_1000537714	F009883	GGAG	MNEASIVIFMIIAGALWAVMSYSVGFREGQRQGYTRGRAVARHAVSADRKVKN*
Ga0164293_1000537715	F012452	AGG	MAGFLENYEGNKERTDRWLRTFPHGRLEAHIVDFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAFNSNMKRWFCEDTVTSALMRVMALVMGGTEKATKETMQQVKTNDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGQLVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCQPLWYVLRSTGKWEPQV*
Ga0164293_1000537716	F000403	GGAG	MSDFMEILNPQTMTGKMYFQGEVLEEYKIEQCDKCSKLVKLDSFGYQKGYDNHEKVIWFCGDCR*
Ga0164293_1000537717	F000903	N/A	MIDRIEEVQCMIAAISHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWVVAKRLGYEYTPGITWDKSKADVGDHIEVKWSPNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWIPVAIAKKPRYRNTSQNNWSVPQINLQPIETLQRSNYAHPSI*
Ga0164293_1000537718	F003182	AGGAG	MHILQFDCSICKKLYGKPKQRHGLKKGAELTAHEWFAQCMGCGTFGIKLVDDERIEELSDGNL*