Scaffold Ga0164293_10004542

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10004542
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11877
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F003964	Metagenome	459	Y
F006139	Metagenome / Metatranscriptome	380	Y
F009743	Metagenome / Metatranscriptome	313	N
F105163	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000454212	F006139	N/A	MATEIVVALIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEQKIDHHVENHQ*
Ga0164293_1000454214	F001872	N/A	MNEWIKQAIAASNNAVWNNGSWGVRDMRGSAGTLSVHATGRAVDLSYRKTDKHTQASRKGAVSFIDVVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKP*
Ga0164293_1000454218	F105163	AGGAG	MKTCTICKETIAYPDIQGKTHFVCDGRVPARKQAPFIQGMLASQSSADARWTKIEQNQVDAAILHVARTKGFFTSDDIWK
Ga0164293_100045424	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTADGVQRTAATGTVANDPVCMWVTAAQVMTYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA*
Ga0164293_100045427	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTNPLYSDYCCWMHTILKLKGEQVGDNWREWISKNPELEIMPVLDETDPNPTDAAPTAAN*
Ga0164293_100045428	F003964	GGAG	VAEVSAKVEVVGLKDALKTLNKIDKSLRREITKDYKRIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQLLPWIPGMKQKIAAKINTRAIKEYGGNKTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMDEANRETA*