Scaffold Ga0164293_10003921

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10003921
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12731
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F024770	Metagenome / Metatranscriptome	204	Y
F041730	Metagenome	159	Y
F044450	Metagenome / Metatranscriptome	154	N
F068570	Metagenome	124	N
F101268	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100039211	F101268	N/A	EEYLKSAPTSVVKMITDLKKQADEATAELRKERIARADAQAVEKAKGWANLNINAEKVGPALRRLSETDSELLKSVEEILSSVNAQAESASIFAEIGKSADFKSGNAYERMTTLAKSAVDEGVAKSFAQALADVASKNPDLYSQYLSEKGA*
Ga0164293_1000392119	F008607	AGG	MDAIYNKVAEFMTDSVTFTAKTSVDKYNKSTFSGDTTVTGRLIYDTTKSKDVQGIEVVDIGRFITKGPATSITVAHKMVVGADTFTINGVDNIADENGAHHTVIRFGR*
Ga0164293_1000392120	F019308	N/A	MAKASFKLDLFGDKELVNALKAGKENTPQAVAQAIWEEANVIFAKSQILVPVDTGVLRGSGGVSAPQMGSQGYFVDIFYGGPAASYAFLVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQQNIKGRIIDIIEKGHRG*
Ga0164293_1000392122	F068570	GAG	MAETRQPMSSSDAGNATGSSSKAQRARGVSAVPAVNPKINQDDFISGLEKLEGVYKFYSGCSVGRITRDLPEPAQSKFKQALVNEKVSSARLVELLATFDITVGSDVMRRHRRRLLGKDGCKCPNES*
Ga0164293_100039215	F044450	N/A	MKAQILKSMIVDGRKLVAGEIVEVKGWRHAKSLANNRYIKLIEDDVVEEKVVEVEKPKAIKKTKEVAE*
Ga0164293_100039216	F024770	AGGAG	MAVSHQRISVGTTATKLTSDYDGKDGQTISVQVPTSGATVYLGGEGVTTTSYGYELIQGTSFSVELQDDEKLYAVVASSTQTVNIFRQGT*
Ga0164293_100039217	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTENVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAAAYVSVDAYQALLTRYNNSNSIRVLVVDAEDRADDASSYATDASKAAGALENYNTNQLMMMGV*