NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10003803

Scaffold Ga0164293_10003803


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10003803 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12894
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012434Metagenome280Y
F016936Metagenome / Metatranscriptome243Y
F024061Metagenome / Metatranscriptome207N
F034845Metagenome173Y
F042326Metagenome158Y
F059946Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0164293_1000380310F016936N/AMNLELIHAELIRIREALEARPFASGAPAAKPAAPRSEEVPMPTEVIDDAGSVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTIIHQKRGTLPSAAVPTTPAVTSVNEEHVPF*
Ga0164293_1000380314F024061AGGMNTGEIKNQAVINNATEQFRSLLETHFVAIARSAEESFVEEENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETESMVDPLQSKLGLVEDAK*
Ga0164293_1000380319F042326AGGAMISDALTLAATFASGGILGYIIGSARGRKRGRDEQWVECFLAGEKREKARREADGRFKSKTK*
Ga0164293_1000380320F059946N/AMNKRKSDEAKRIQCDAMLAQFMPVKTISQALKMSRGTVSERAKRAGMTRHYITEAEARLLFKNRIGGGAK*
Ga0164293_1000380324F034845AGGAGGMTAARTAYWREYNRRNSAKKREQYAAFRERNKDKINADKRAARAAGKVAPRKASAIRAVKPTVAKPRTDEGKAEALLTLREKFAAFRAKRAEGRE*
Ga0164293_100038035F012434GGAGGMSATDALTNALVLALTAPDQARADRAIALAESIGAGCTPRQIATAKRNASKLAAK*
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Institute for Fundamental Biomedical Research
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