Scaffold Ga0164293_10002881

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10002881
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14591
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018918	Metagenome	232	N
F029047	Metagenome	189	Y
F054621	Metagenome	139	N
F068473	Metagenome	124	N
F084137	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000288117	F029047	N/A	MDYSELTQYIDPDNSLSEESRKMLDPTQNALLRHQAVLTNLIDEICRPAHIPYKPKHADLIARLKHLAVDLDLSGNTTDWQTVSEAIEALGG*
Ga0164293_1000288120	F068473	AGGA	MIAKAKPNVVGARDYIGNSDGPAAGKRAGTEEWVRQAAKYSNGALWNNGTYGQRDVRSKPGTLSVHATGRAMDLSYRKIDGKGIKEGRAVSKVFIDKVLANANAFGVQMVIDYHSKPWGASWRCDRQAWKVYETKTVSGAPGGDWWHIELSPAFADNPDAVKAIFEATFGVSTTA*
Ga0164293_100028814	F054621	AGG	MRQQILEVEGIQEALAELNKIDPKYRRQVTKRIKNSGQIILNEARSMVSHFDNSKGTGEPLSGMRRGNLVKGRETSWRTDQVQKGYKIKVGVRATRERYVDFNKGGYTEQVVFGSKPYKLMVVQSTDPAGVIYDHAGRNTDGLFVTNLTKEEGGQPRVIDKAVENNKPAVQKDVELVIDDVEKITNRNLKRRTR*
Ga0164293_100028817	F084137	AGG	MYIIKSPRIGVVGQEFKVRPGLNVPALIWGGFIEEVQDEATEEVTEEVSTPAPKKGAKNKKATKEE*
Ga0164293_100028819	F018918	AGG	MAVYSVQQKYLTDNYAVVVLVTNADPLEVGQSVTIAGVDATFNGTYTVRELPQYYFTGVDEQGFFQYDIETPIANQVLVAKTAANVNIVAATGTLTTTPVCTWVTTDAQIEDWLGIGTATASDQAFITQCRQASNEFCYRRRAEAGYRNESLTTVPNASVLLGTIAYAGFLYRQRGAVTDFAGFDGLASGGSMGLSPMIKQLLGIDRPAVA*