Scaffold Ga0164293_10002825

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10002825
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14758
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F021065	Metagenome / Metatranscriptome	220	Y
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000282512	F025683	GGAG	MVVDLLDPQTLGRLVLVIILMVISAAAGYAKGFKEGKREGIARRKAMVRHIANKAVK*
Ga0164293_1000282513	F005697	AGGCGG	MGFLDNYEASRERLERWLENFPLGRIETRIVEFSAEKGYVLIEAKAFRNHDDTLPAGIDYAHGYVGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKVANAEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHEGAPKSWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV*
Ga0164293_1000282514	F000403	GGAG	MSDFIEIIYPQTMTAKLMENGEVIAEYKVEQCDKCSMLTKFDAFGYQKGYDRNEKIIWFCAGCR*
Ga0164293_1000282515	F021065	N/A	MKMQLTRQEEFTCHEAALHLASKNKDYWQTREGGYSMDKSLHDLIAQDAQSIGSEWVVAKYLGIEFDPFEQKGKVKADVGSHFEVRWTKYVAGHLVVHEYDRPNDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHSAV*
Ga0164293_100028256	F003134	N/A	MTQWNPVWLVEIDGVAYTDAVLANLVIRSGRTNIYEQAQAGYVNLQLLDINQTAIPVSINSTIGVSIKDTSGAFVAIFGGNVVDIGLEVRDVGSSNFTQTYNITALGALARLPKVIYTDALARDFDGDQIFQVLQSVLFGSWASVPGALTWATYNPTTTWTNAQNTGLGEIDRPGNYDLAARSSGQDPIDVYSLVSALATSGLGYLYEDAQGRINYADSTHRTNYLSANGYVDLDANHARAAGLRIQTRVGDVRNAITIKYGANSQNDVSDSDPASIAIYGNLAQIITTTLHDAADANAQAAFYLSLRANPQPIFSQISFDLTNPEIDNADRDALINIFMGEAISLNNLPLNMSSGTFQGFVEGWSFQASYNQLSVTLLLSPLAYSLQAMRWNDVPITETWTSVSPTLDWENATIVA*