Scaffold Ga0164293_10001807

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10001807
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18013
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (69.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y
F054798	Metagenome / Metatranscriptome	139	N
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100018071	F089832	N/A	MAKYYIKCGTLELIYSTNKKPLGAAMDALWETNKFDVLDEYFYIDERGFKDYATALPDTKVYKSKKVMEKAGWTLEK*
Ga0164293_100018072	F008812	AGG	MIQWIGVLIAIFGLAYNGVKDYQKGDIKLPKLPQKQVLTKPVYPVQYCLMAYDPNIDKVFYLHENGQWHDYAPQQRRYETTPQNHQTQGQAAVGNAYGAPRGSGQYYVR*
Ga0164293_1000180720	F036210	GAGG	MKSRVVNQINRKEIQRKYIDQILGSLDFMQIKDRLRDFLEKEKDKESNYALEAEIRKEAPDVLVDNWEDFNVPATLTQEYEHHA*
Ga0164293_1000180723	F035281	AGG	MIEFRAKDGTFFYQGVFMKNLLLVIALLCVGSTSMAGECANGTCTLRSRAVNVTREIVSVPVVVTRRTVEATRNVGRKSVARVRSIVR*
Ga0164293_1000180742	F054798	AGGAG	VIYLYLNETQKLAEIVAELVKLNMGVVAELHGNKWHIEVTK*