Scaffold Ga0164293_10001323

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10001323
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20579
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036141	Metagenome / Metatranscriptome	170	Y
F041720	Metagenome	159	Y
F048791	Metagenome / Metatranscriptome	147	Y
F057907	Metagenome / Metatranscriptome	135	Y
F069774	Metagenome	123	Y
F074495	Metagenome	119	Y
F078215	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000132310	F036141	GAG	VEWLVPLAVAVIGGPLVVVVQSLRKENTSQHAEARELLKMVAGKVDKVDDKLDGHISWHLSRTRKPKVKKDEVIIKAD*
Ga0164293_1000132320	F074495	AGAAGG	MNKESQSVGQGLAGTQPYGAVEGARLVGNARADYHAGAVVGSVEVAPPSGVAYGNVHYKNGLCQATNSKEEECKAPKAKGTDYCIGHLRRMNAIGDNKDAALDPKE*
Ga0164293_1000132321	F048791	AGGAG	MAINFSNANLTLAQMRTFVGELSDLDIGFDGNDDISTDLVNGFIKEGFQKIVALSNRYPFYQSTYGFTTVANQRNYSVFGRILPSIETVTITDIQQLIAVVNNTDGGNSLIYLDQARCESIWVGTSDQPETPAYFSIWANQLNLWPKPDQTYSMTIRGFRIPSLSWLQDENLAIDIDPQMQLPLINYVMARIFQFQEDTEMANEYMRGFEKAVAIIQGQLTAPSSNRQLIMSGGLQLQAYDFAPFDTGMRVLPGSPYPLGVAY*
Ga0164293_1000132328	F078215	AGGAG	MAFDPTYFEQQRRNLFNQYAQQAALNAYQRYLAETRAQRPITELEESAFGRTPSGGLGQVPKLTSSYGRRGLQGMNTKSGIYNQALQSYAKNRAKNIGYAKEDLAGTTRGYNLADTQGLSNYEEGLKDLESDKARQIAADAQSLLQLR*
Ga0164293_100013233	F041720	GAGG	MAKTTRLFLTETQESYLEWLLQPTDSRNPKTKKDWAEQHDLHINTLGQWEKNKNFVERHMLGVKGLAQSPERAQALLDALYIKGISGDVKSAELYLKATNQMPNAAQQINIKSETSIKELSDEDLQAMILEITQKKQPTFNIIKDTE*
Ga0164293_100013234	F069774	AGGA	MKAVWGYYESSSIQGKSNSNMVRAFNTLKRDLKRQQDDLLMDHQDESTVSGGNASTFQFHYLLIADTTPMSASTVVPTAATFDANQGATGTASTYFETRRDFYEPGRGF*
Ga0164293_100013239	F057907	AGGA	MKCTTCSTPIEEENDLKRQLCFKCHVKGIRFGFVSVGYGQSEWNNSTIRETQRMYEAMPNVEKVSTRRELI*