Scaffold Ga0164293_10001314

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10001314
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20636
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (24.32%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F014838	Metagenome / Metatranscriptome	259	Y
F019476	Metagenome / Metatranscriptome	229	N
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000131416	F010081	N/A	MKEQIDAIIKKHCLKMQEIDKTKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYNLNSFTADDKKGHCC*
Ga0164293_1000131417	F007859	N/A	MKKLLIAALLCTGCTSGMYLRYSYNRALENLPPCSRVHAINNDYITYSMIENSTNSVYVVHTNYYRAYYNCEGKIINTTKN*
Ga0164293_1000131419	F008688	N/A	MNRFNKIMLGSLAAILLTAMTIEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE*
Ga0164293_1000131420	F013524	N/A	MKTNQEVISRLRQFTSYNCNNLLDAKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF*
Ga0164293_1000131421	F009135	N/A	MSKPKYYLTVNLPPNFDDLDAEVIKKELMTYINSRNQWGALYGPKSSKKGITVEKVIYRTNED*
Ga0164293_1000131424	F019476	N/A	MNNINNKTKSARIILDIEWEAVDGSDLPSLWDWKRIKMPMDLTKVKYIGIQTPNGPENVTNWMGN*
Ga0164293_1000131426	F099167	N/A	MNLVMNIKILNRTIDIAKAMCPLNLEHRCSHIAFLIRCGKIVHIGTNSCKSHPKTLEYDYKNHQLVGLHAELSVCMKSGKEDLKDFKMVVLRVDRTGKLNNSKPCCGCQSVIKQFNVDEVWYSNSYGQIVKN*
Ga0164293_1000131428	F006018	N/A	MKKYSIKTNDIGMCMSVGCDFYQTCSHNSVNMFYKTKRKFDPVLDESLCLSYGSGKNTKDYVDNCYPNVLKKIYESGY*
Ga0164293_1000131432	F020529	AGGA	MFSNKNIVKYSAKYFVLTTLGAYIFNLSASMINQKSDVANLAGSALFAGLFISTLVILKSDVTKLVKKLEENKNKENE*
Ga0164293_1000131433	F022636	N/A	MSTYRRATLQDLAKLGYVPNTQKYSEHIAFAKKYYPPEATTMVMVVHSEYNDCTYDNSFQYVIVYDKDGNELPPLKKTAKECRANWNIDNLPIPNTSSGHYGASESDEPLEDVVIPLTIDIPELYIKEN*
Ga0164293_1000131434	F014838	N/A	MKESLKKIEELKNQLNTVKSELQKEFKAELKKIFVDNPTLDSVEMYINNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKDYKANPVLESLIELFGDVQCIHEDLYGDEYEHLSIIREEVLKF*