Scaffold Ga0164293_10001281

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10001281
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21016
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008080	Metagenome / Metatranscriptome	339	Y
F041768	Metagenome / Metatranscriptome	159	Y
F057138	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000128112	F008080	N/A	MRGTNEYNRDTIDGPTPEQTQEQFEDAFRDGDECFCGGDVYETCPYFSADGYDSINVYLGGDEYIKNQEEPIFTTSDWSRFQFEKGGGCNYIPQEPDEVGKVNIWWYHDMKFNYIYYWENVTEFDPKKLTVQYGVDQDGQKYLEEVYYNGEAPDDYHDHGDTGYGYTGPEFVYHPEQKFAEEDED*
Ga0164293_1000128128	F057138	AGG	MKRILTLLSLVVSLFATKALAENVKASTEAGYMSHYIVNGVARTEAQAFGAVNIGATYLGVDAYLGGTIIPVSSALDESHWTAGVGKGFKIVEGVTVRLDGQAFRHLTAIPGAPNSTEVAGILAIENIVATPYVKGTHDLDLDQTGYVVGLKRPTDVFGWFTITPLVEYGKFTDYDFKTAKLTVSKLLFNHLEPFAEVGYYDNNFGVSKYNFAIKELNDSVVAVGGLRWNF*
Ga0164293_1000128138	F041768	N/A	NEVFISKILTQEELKEFRVGLDISNELAKEVEGPAFEKMDSKAFFGEKYLDYKKKIYDSKDKFRTLINDSSERIIKEETQLLNIYLYSLCLIIIALVYLIKHDNHPVAQKKPIKKKKK*