Scaffold Ga0164293_10001103

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10001103
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22564
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002405	Metagenome	562	Y
F021243	Metagenome	219	Y
F046909	Metagenome / Metatranscriptome	150	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000110320	F046909	GAG	MMPPPSKNLCLMMAKINYPRDEKLSWTWLFAWGFHEAYVEGWYEGVKL*
Ga0164293_1000110322	F021243	AGGAG	MKDPEDEAFEQLALKQGQWEHTSGWRKRQIERDFAAIDDANNIRKKQIAHMDMHSHPAEFVHLHRNDTIEEVAKELETKFTGPFGRDTVQSFATFVRSMKK*
Ga0164293_1000110323	F093280	GGGGG	MKKETEALIKATGCADVGELFDRSIRLGQVLHQFKQEHGRIMDATELRYLEAVLHAKPQERS*
Ga0164293_100011033	F002405	N/A	MIHLPEPEWVFPFNGMEVGESFFIPTLRFAEMIYAIDCGAKRAGVKVKSYITAKDKHIGVRTWRIR*