Scaffold Ga0164293_10001029

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10001029
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23340
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (37.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F021296	Metagenome / Metatranscriptome	219	Y
F021537	Metagenome	218	Y
F023349	Metagenome	210	N
F078699	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100010291	F021537	N/A	MQTREQKLKLLKKTIETLWHGVSDTKEGDYPKIINLYKEVLKLNPKDRDAWENMIWLMWSMAINKKDT
Ga0164293_1000102920	F023349	GGA	MKHVLYEVTDNFDIIIKLTFENYTYLNAFIEQHTNDKKYEPKFLVLEINDEGDIDFIRTYNGTKEISKRYVVEFID*
Ga0164293_1000102931	F021296	AGGAG	MSDTKSYLELDDEPVKVQPNQSVFNPVASFQVKEGATAKQDANGNWINAIGLQSTASHRHVSKIWQDKCTPLADFVADVKEQAQFKRDIVKPESEIRLLDIDTLIDGTPVNESGLNSLRMFTDMPSSMVSFLREKSYGETLTKILNDELDSRENTWNNSGKQPREFRVRVRHDDDGNDVIRAIVSERYGVIDNHEAIDMIANSLPSLSDALASHISHDGDDMFGNVLLPDYMRSEPDSDYGVGISFRNS*
Ga0164293_1000102933	F002398	N/A	MKRVIKKMIHLLSLFLILSADPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKDKKSFFEYLDSIGIEHNKVGSYYFFIRKNK*
Ga0164293_1000102934	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDETKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDEESN*
Ga0164293_1000102936	F078699	AGGA	MKIGFRVVGTLEVPDDIILHEDVLNQLYALEMNDKMYMLQMCLVAESPQGEYEMVHMAEEMEEHYFKNVRYSDAEFFELD*