Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10000623 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10000623 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28659
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (50.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28659

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (50.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F001881	Metagenome / Metatranscriptome	622	Y
F014121	Metagenome / Metatranscriptome	265	Y
F019061	Metagenome / Metatranscriptome	232	Y
F036207	Metagenome / Metatranscriptome	170	Y
F074911	Metagenome / Metatranscriptome	119	N
F075870	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000062310	F074911	GGAGG	MILDEELLKLVKEYFEEDWDENDGWEYSGNFDAFVKFAQEIYDKAYDDGCFDNY*
Ga0164293_1000062311	F014121	GGAG	MMTNTASQIWETFKAELIVEPTDDMKEALASSIRVISSLIHRDGVLSNEPWLTHTAQELNEIADDVEAL*
Ga0164293_1000062321	F001881	N/A	MTERAQEFMKAVWDCRNNQGADTEEKLVSAILQVAAETVKFYNAQNDMIVLDKQDLLQLAQEIVE*
Ga0164293_1000062341	F036207	N/A	MINFISGTIFGIIVATIGFTPVAGALDGMMLNLQKTTVEMNAPKLPPPQKF*
Ga0164293_1000062346	F000345	GGA	MTEPNEFGKALQEWWDSESCKQLQKESEEAKQRAVGKYFMLSESDKLDMVQAICHIMCKAEKEGTSHRGLMDELGIYPTGFWVDGLMEVHNALWSYYHDQKKEKELKDDLDALEKFTENKRDY*
Ga0164293_1000062356	F075870	GGAG	MIKPIKDEFPHGDGFPIKIIHKDGKELKDSKTCYFQTEDHAQKYIARNKFKKKDYTIIYKNEQ*
Ga0164293_100006237	F019061	N/A	MKKMTEPTDTEILEFLLNQFHPHNLQMNGESDWVFMNGGSRMNHLKGKTVRNAVIAAMRAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10000623

Overview

Ecosystem & Geography

Associated Families

Sequences