Scaffold Ga0164293_10000534

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10000534
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30335
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (29.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026831	Metagenome	196	N
F035761	Metagenome / Metatranscriptome	171	Y
F048260	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000053434	F048260	N/A	MYTRTNARNKTNFVGHNTTGVEIYLSTPLAKAKKASRLTLRSGKTRVDLDGRQIKALREVLNAGFNSKA*
Ga0164293_100005346	F026831	N/A	MKKFLTILLTALNLHANDLYLYDKNNDVELTEVINNKLNVLPTTIGKTYTITNSLNINTTNSSVSYIIPYRIAVFQKENTSTYFNQTSTEYVNDFKLPEVVKVKDAMFNFTLNGELYCVSESTNLNTLLTTLCSVTFSQSTFFVKSNEKFTHVYVVSGNVTVLDNKSKKKKELKSGDYLVVTPQIVMSAREASVTKLGNSFSVKEVEDEEKEVHSKELSTLKSKLDNTLFVNYGQNIFGIKLQ*
Ga0164293_100005348	F035761	N/A	MDQFVTTVKLNQELYNQFKELNIRGKISFQDFVNKCLEKYLIDAKFQTEISESISTKLSFNAPFSLSKESK*