Scaffold Ga0164293_10000489

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10000489
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31608
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (21.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038642	Metagenome	165	N
F063618	Metagenome	129	N
F065741	Metagenome	127	N
F085402	Metagenome	111	Y
F099218	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100004892	F065741	N/A	MAITINTEPNDVAPVYSDVSYVVTSTNYAQANFKFIAVIKNASGTTIAKLKAPIFHGTTDKGVFNISRILQNYVTYDFTQNLTAISKCNNSYLAYSVEFGEEYGGTEYLNLASDTGKYVWNGLFNLYGSETPDTYKINVTPNSAKFLTRVRPRIVTREQYDYLYFLLLGFNIEPKVIAYNAAGSVIATSYLKLPWTPSTADTSQFMVRFGAGVVQLNALTAGELTSGTPGSVVPVGTAYYTIQFTQTIGGNFSEIYRFDVVEECSKYVPQYLYFLNPLGGFESVRCSMVSRDKYSVSRKQFKRNNYTLTGNTFAYDKTKHGMTSYATEKTKQVVLNTNWLNEVEFEWLQDLIASPVVFLGDIPVNITDTNYEVFDYIDGPNNLQITVEYTEPERLQNA*
Ga0164293_1000048931	F099218	N/A	MMDIVNLLFDVEEGNASALDAFCHLTRLEKQIKAAKEQIQSQAINEAQMYGKTFQHMGFEIQCRSGAGRWKFDHLDEWSAAKMKMNTIEDLAKWAYKSEEKGVLPVTDDGDIIQPAVYVAGSDTIALKEIGHAE*
Ga0164293_1000048937	F085402	AGGAG	VATEKQTETGQTHEVSEQTQVSKTIPRTRKMKLKNYFQPTPKRFRVLGDSIAAASLFVAGLNLDHPKLMLISGVCGAVGKFVTNFFAEDEKK*
Ga0164293_1000048945	F038642	N/A	MLYITKAGTPELIITGREKVTVSPVYYLLVFESEMSQEQKAFIVTDTSTAPNRYQLFSFVEGSSTAKTLAVGTHYWALYAQTSPSNTNPLLASQEIDRGLAYVTASHTAFNDHEVNTTIKQHHIG*
Ga0164293_100004895	F063618	N/A	MKLPKNWNEISIAQFQELQLLTEPSFDNQLKTLSILSNKKLDTIEEMRIVDITAALAKLAFMAELPTAKNVGSFRIGNTLYKFAANQHHLQAHQFIMVQDLFAEKDKWVQNLHMIMAALCVPYRIFPPKRKEVKTDDFEKIAAQFRERMPISFAYAYTLFFSLCLPQLLEATQVYLEQEVEKLKKIADEKTDQPSVG*