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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013004 Open in IMG/M |
| Scaffold ID | Ga0164293_10000444 Open in IMG/M |
| Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32738 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (75.51%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003378 | Metagenome / Metatranscriptome | 490 | Y |
| F020354 | Metagenome | 224 | Y |
| F028157 | Metagenome | 192 | Y |
| F033428 | Metagenome | 177 | Y |
| F041769 | Metagenome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164293_1000044411 | F033428 | AGAAGG | MSRTEGALVDAKHVSLLSARFQMIPEPCRTTIRDINDESFGSISMTPATERRVGIARILLEIAEQEGHIDKDLVRSVCMHRTGKQYQSAGLALADLSYIDAERVWSSLQDIYAERAVLEYIPVSNHYIIKEKTHG* |
| Ga0164293_1000044420 | F003378 | GGAG | MTTDMGIKQNATIARFLDLGQRLFSLFLARALPAVTGGALIGVSVAKAAILAGAMAVLEVVQKLASASTDGELTTDEIKTAFSNGKK* |
| Ga0164293_1000044421 | F020354 | GGA | MFKKIGNEMLALGFTLGASAITIMTLSGSIQNWALFFTILSLALHLAGTATQGDGDDN* |
| Ga0164293_100004447 | F028157 | AGGA | MNIDALTPQFVTVMADHDGHARWIATLDSTDIMNAYRTRGLYLLVTLNAEGEATVAFKPGNDWSTTWSPPVTVERR* |
| Ga0164293_100004449 | F041769 | AGGAGG | MTYDPDALRLMHDEAQTRIAELSTALSIVTDQRNNLEDSLQAAIKELFHKDTQITQLNSTVERLRVHIAQGIEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |