Scaffold Ga0164293_10000337

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10000337
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35991
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (63.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F021067	Metagenome / Metatranscriptome	220	Y
F054875	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000033718	F002997	GAGG	MGIARFENITINNLSFGKSSFGEQSTTITKWFETRARVRSVANSVRISDKYRVYSDIVEFTLNYTPNTKTIIDNQNAYSLTWKSFDWRVDSVRESDDRMTVKFLCVRNDPVVAV*
Ga0164293_1000033724	F054875	AGG	MTKFSSAFGEKYQTNKKNLLVRSFELGGHTFKVRIPLMAESDEIYTKVTNPNDETIEKIYQELTKPLMQFESNQTEEFKFVENDILVDGRSMREAAKNKAITEARITEFFKLLVPELENASLEDLTYQDIEDEFPMSVQLQIVEKIGEAISPTYKESRGN*
Ga0164293_1000033727	F006660	GGAG	MSLQTIFDIQQSMTVNNRRTVGQQVSRSGQVRVAQYLTSVPWVFTVTPHNYLYYPQVRNVIQAIDNKDRQLPESISFASTNLSWFVAYQGDLTTGQVNALTLASAPAANATTISVGNLPSVSSSAYVFKAGDFLQLGLYPYKVTENVLRGSGSTVNVTLHRPVISTPSVGTLTAVGSACTFYMLAETCPTYTLNPMTNGAFVQWDAPFVFREDITG*
Ga0164293_1000033737	F021067	GAGG	MALKISIPTSNVGVPFTDAYARITNIFGNKDQVQYQVSVSANADARQANAQEVAQHAFYCPTPQGNLMDGLYADLKQQVGFENAQDC*
Ga0164293_1000033741	F000220	GGA	MSEDKTNDILSKVLSYVDSPFKLFALILMAVFTFAGYFVWQNQAFLFEAYKENKKLPTIVEDRAEDVAAHLFKNSDAAIVAIFKVNPLFGTRVLFRAYTREGRDRTHEGLDVGLFTQSSANNRDVVALMANEIPCSEYTVAQSEIGLWYIEKGVTFGCRVSVPPEQGRFVGQITVGWEKEPKDLHKAMGMLQIASTMLARAKQ*