Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10000329 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10000329 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36218
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (61.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36218

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (61.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004132	Metagenome / Metatranscriptome	451	Y
F010766	Metagenome / Metatranscriptome	299	Y
F011077	Metagenome / Metatranscriptome	295	Y
F019324	Metagenome / Metatranscriptome	230	Y
F028150	Metagenome / Metatranscriptome	192	Y
F034566	Metagenome	174	Y
F044481	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100003291	F004132	N/A	KEPLMSEVMLQDQLTVSYNPNLLVTYKYIPELTPSHGVQLGEEPAATFMTDKVTEIEWQLHKSREYAARSSALAAERRGDIEWLEEHIVEWYDPNYSKEEVLKALAEHFAINPMKEISVYGTVTFSGTIQVPLDEVEDFDLSNVTIDAEISSYDYEADLTVDDVSLEEN*
Ga0164293_1000032920	F034566	N/A	MSLLFMGGDLKQARKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHIRTVDKANSVIDDIVNRYNSLVSRYNKSTGGSNYDLLNVYSYKVKP*
Ga0164293_1000032949	F011077	AGGA	MHELMDTNLTWDDGDIWKGWTYNPTANRYYFDDIGDESLGTLWNSEFLMQAYI*
Ga0164293_1000032953	F010766	AGGA	MMRIKIIKFVVKALGYQWSGDDLKLPVWYVKEKKKVK*
Ga0164293_100003296	F019324	N/A	MSMLGYERDDLDNMVLAVESALTTVNSDDDPWLHRNLTQASDFLQGLWAEGYFE*
Ga0164293_1000032972	F044481	AGGA	MSKRRTQAELDGLLKFVLGLTLGAILFFTTMGILYALVFVEQPLTGQSENDKMFFNVLGSVATFITGTLAGILIGQSGAKDIMDAQLSNKEMDSKNTLADKKLESEIDEAKARRLNKPDGAMPEEQPIDTDWDK*
Ga0164293_1000032974	F028150	AGGAGG	MKWLKKWGMAALNENFTFLGFFVAWVVLEGSAKTVVGYVTIASVALWFLTMGIREKGEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10000329

Overview

Ecosystem & Geography

Associated Families

Sequences