Scaffold Ga0164293_10000106

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10000106
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55328
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (23.30%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025686	Metagenome / Metatranscriptome	200	Y
F051871	Metagenome	143	N
F075743	Metagenome	118	N
F090100	Metagenome	108	N
F100702	Metagenome	102	N
F104777	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000010622	F090100	N/A	MSKSVSLSGNQELQFVTDSWEKTVTVYLFDTISDTRVTLTEFYNGRWNSKSSSHLDKFFELIKVNPKIKIAMKKAFSELRAETPVNTFSTTLKCFKRRFIIKVKKLVK*
Ga0164293_1000010624	F051871	N/A	MAEFSKQWVEKNDPEMGWDFDIEAIASEMPNSTMTNYYLCEGFGAVAIGKDENGEIHLAIANGNFNDEGEVEAEWKTLEEVING*
Ga0164293_1000010628	F104777	N/A	MGGNNMKKLILFLIVAVLASCSAPQKGYNYKSHSNRQQTMYKQTKRVNKGKSQLNHQCTPKKHR*
Ga0164293_100001063	F100702	N/A	MTLQELKKEVAKKIMLKKNAWTETYAKEGAPTDFERQTYKEYADIIDREIKEMIPESEWLTIELTGCAKGELSHYTIEDSLKEVFKPREGILYDSEGGQFWVYVKSSLVQKVLRHIDYHFPGQIDLHVGINKYGDNPWFQNWTQAEMFLSAQKEG*
Ga0164293_100001067	F025686	N/A	MAVRTYIRVTYVALSHYGKPIATAHTEKDLKDGIDEYYGIGTDNKAKYIEWVGNNSKYPDELEGHHIYEVDDFNGGLEFEHVKVYCVEFYPHTKYEVDTQKEALIELTNINLEDEN*
Ga0164293_1000010682	F075743	N/A	MLYYNKIKVMEKNDLSSVTLIKDPSIEPYFIGRDANSYTIYETVYPGTNTKGRGRKTRTKEAVKAVSFHTNFGSALSSIAKLKVEKRQVYDTIHEYITEWRRVKEEINQIVNF*