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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013004 Open in IMG/M |
| Scaffold ID | Ga0164293_10000002 Open in IMG/M |
| Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 210297 |
| Total Scaffold Genes | 270 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 188 (69.63%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007028 | Metagenome / Metatranscriptome | 359 | Y |
| F056543 | Metagenome | 137 | Y |
| F067665 | Metagenome / Metatranscriptome | 125 | Y |
| F095373 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164293_10000002162 | F067665 | GAGG | MSIEENVEEFLESLDSDNQDDKPKYTNTLYKKWFKSKSQSGFVSIRPWFQGMKFSIDIGKTNASGKLESNTNCFVDAIDFAAYLKAITNGTAALNFPANERLGLATPEAYVSYGGTMTAAGQSISRIFKCQYWQSGDNVDTSAFIWKAGHFKARKSDSGAFIPDMKSPLSVDSIKVTRQDVVSISYLLDLSLVSHVTNNTEWYDA* |
| Ga0164293_10000002225 | F056543 | AGG | METTNWCGCMKVHTFKEGIADLFSRDLVEGKRRGEIYELFEAKSMAEFKDEASDIAWGVGRLIGALMNKAYIRVPGDKIHYNKVVARVEEYGCMRSKRFLIEGKCPNS* |
| Ga0164293_1000000262 | F095373 | GGA | MAAGKLNYIVTYEGLSQVFGCASKKIALESPPPEGYSLKHKKVLFITFEPDKNNLCVYPVPQEEVMGAEIKSKKQSDE* |
| Ga0164293_1000000295 | F007028 | AGGAG | MPKVSQNAHEQSIDSPINQVVNLMAQEVTISTNPVFICGVNRKVNIGNFENIDVYAGVTIPLVNIDPSDKEALSEAIKEAAADGFALVSRETGERYTLIKDSQQGK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |