Scaffold Ga0157364_1022223

Overview

Basic Information

• Taxon OID: 3300013002
• Scaffold ID: Ga0157364_1022223
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta sexdens ASBM2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6106
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Boletales → Coniophorineae → Serpulaceae → Serpula → Serpula lacrymans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeirao Preto, State of Sao Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.853

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010740	Metagenome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157364_10222238	F010740	AGAAG	MVFVDRKRNTDTSRNGCQIPMYQGGPPHEPYFIAIDNKDQVIIGPSKKIVATHVVGELEVLV*