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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013000 Open in IMG/M |
| Scaffold ID | Ga0157360_1011310 Open in IMG/M |
| Source Dataset Name | Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2964 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Ribeir?o Preto, State of S?o Paulo | |||||||
| Coordinates | Lat. (o) | -21.165 | Long. (o) | -47.848 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017769 | Metagenome | 238 | Y |
| F029617 | Metagenome | 187 | Y |
| F030951 | Metagenome | 183 | Y |
| F050816 | Metagenome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157360_10113102 | F050816 | N/A | MHVALKALSARNVVGHTEWKITDLWLGVARLIPSLTLQERLLQLVLYALTPSSV* |
| Ga0157360_10113103 | F029617 | N/A | MFPDLSMEKVLAMHQSGFGASASPNRGDAVHSGASRAPKMTTHRPTRRQVLIPLDTPTAEVVVANAATAVESCNRGLVEAHSKLRVESVRKAWDGISMSTNFAASAAELEVIKQ* |
| Ga0157360_10113104 | F030951 | GGAG | MSWDDQISAEESKGLASGVICAPQAPLSTSLMPHGPNHRTAESPSEIEGGSAVAGTCDVTGDSDNLVTCDSNCDSLPQVSQTCDIVISDVTHDYDLWDDEHHVTSLSGHFGYLENDAKVLALSVLCIVRFIQKHSIGSRLIEQFPLILETGSIMWHLFQTMSAAGCDRFKVLPQPNSPSLVEAMKTLYGPNLPQEPSPDTEMAVDQLAVEEAPFTTVTNTKSKGKGKVPSSTNFSAPSQNVPTPVPVVSRAPPLLPPALTATAKSTPAKVATKPQVPKQASKSFAQATCSGNF* |
| Ga0157360_10113105 | F017769 | N/A | MCSPFRSRGKGSSRELERDNSVRELAYNDPRGSRCPGTRTDLLLFTFLLLREKRGLRRCFSRVLSS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |