Scaffold Ga0157360_1004201

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1004201
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5147
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F004107	Metagenome	452	Y
F015423	Metagenome	254	Y
F075516	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_10042012	F000523	GGA	MYLAILERKLWWRDKDVRAENDLLNDLGFNLCVAPRSPVMRLVAHFGVMEVVKTEVLRSQAKKSE*
Ga0157360_10042014	F075516	N/A	LSERSIHRVDGDGDLAMEDDALGGFRELREGVVCGGAVDDWGQDGTEFCEEVEY*
Ga0157360_10042015	F015423	AGAAG	MHLPEGNFIGNDTTLEIILFEVPSNKHSSTGGVGVVGRKCPRAKVESKKQCVDLESTSVRMDIGWRWSEAHIRGVMRGIQREFRSERADVLRCIGLVVAQMSSTRLPVCAESWELRSSFPRGSRRAESFVPPD*
Ga0157360_10042016	F004107	GAG	LGLDRNVSDVVNCRGFSAGENGGFTKVSTGGTEAGLWSTDDGQKNIDPETQSINGL*