Scaffold Ga0157360_1003560

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1003560
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5595
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F093006	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_10035601	F093006	N/A	LIVQRPFQSVDGICFCIDRKELTPKLLFEVDPGLNWKNAGVCLLAKEVLGPLRSTSILEEGKGPEDFFLITGELIRG*
Ga0157360_10035604	F000383	GAG	MLQKGSGLADVEGFSLHSLLRHLFLSYHTASFTLRRASVHLYFSSLPIDLRVVVLEPGITEDHVLLSETGDSEERPFGVGFVVEDNVYNFRDLACLVAEAVHVVYQYRARDAPSVNTFCPDKVSIYEVTRSSGVQKHFDGVHLAGVCGADFYWQDDRHSAGIKGIDGESFG*